Training / Resources

Here I will share links to my protocols, data & scripts.

Switchgrass mesocosm data and code Griffiths M, Seethepalli A, York LM. (2021). Data and statistical analysis scripts for manuscript on switchgrass roots in nitrogen and water stresses. [Data set / code]. Zenodo.

A 3D print repository for plant phenomics Griffiths M. (2020) Plant Phenomics J. Accepted. [Data repository website]

How to use a PlantID system to organize experiments with barcodes Blog article

Ion uptake kinetics protocol, data, code & equipment designs Griffiths M & York LM. (2020). Root multiple ion uptake kinetics data for maize NAM founders, statistical code, and RhizoFlux hardware plans. [Protocol / Data set / code / equipment designs]. Zenodo.

Protocol and data analysis scripts for high-throughput phenotyping of specific root respiration Guo H, Griffiths M, Seethepalli A, Dhakal K, York LM. (2020). [Protocol / code / equipment designs]. Zenodo.

Introduction to plant phenotyping Griffiths M (2020) 02/20/2020 Texas Womens University. [Presentation]. figshare.

Meta-analysis data of multiple ion uptake kinetics in crop roots Griffiths M & York LM. (2020). Meta-analysis of multiple ion uptake kinetics in crop roots [Data set]. Zenodo.

Softwares & tools for image based root phenotyping Griffiths M (2019) 04/30/2019 International Plant Phenotyping Network IPPN 2019 root workshop. figshare. Presentation.

PRIMAL: Pipeline of Root Image analysis using MAchine Learning Lobet G, Atkinson JA, Noll M, Griffiths M, Wells DM.